PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g028915.1
Common NameMTR_7g028915
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 213aa    MW: 23876.4 Da    PI: 5.5996
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g028915.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-0583105123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C++ F++++ L  H+++H
  Medtr7g028915.1  83 YSCKFCSRKFTSPHALGGHQNSH 105
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-480108IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.46E-680110No hitNo description
PROSITE profilePS5015711.34483110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MCNKGKEKVN EESVANLKTG ENLNNENKRK AIVLGESHIE TQNSKTPKKD VAEEESTDSS  60
KEISPFLLFG FIVDLRKGIQ KAYSCKFCSR KFTSPHALGG HQNSHKLERS VKEKIQAFNK  120
AWINYSNDNQ GISLNNIPPF HMGCGYQYHG YNNMIQHAGP SNFYAENLYG ALQHISEIDE  180
VNEGDAGSDE FDQEDKETQE EDASKIDLTL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g028915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1591461e-153AC159146.4 Medicago truncatula chromosome 7 BAC clone mth2-75l24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447969.11e-157zinc finger protein GIS
TrEMBLA0A072TXU51e-156A0A072TXU5_MEDTR; Putative transcription factor C2H2 family
STRINGAES779541e-112(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1627936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.13e-10zinc finger protein 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]