PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g029400.1
Common NameMTR_7g029400
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 193aa    MW: 22279.8 Da    PI: 6.1151
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g029400.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1461.1e-1484136557
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                      ++ rr+++NRe+ArrsR RK++ ++eL   v  L +eN+ L ++l++ ++  +
  Medtr7g029400.1  84 RKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLVDKLNHVSESHD 136
                      688***************************************99999888665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.1E-1580144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.81882145IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.4E-1284156No hitNo description
SuperFamilySSF579594.19E-1384134No hitNo description
PfamPF001701.7E-1284142IPR004827Basic-leucine zipper domain
CDDcd147023.09E-2185136No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVPSEMRGVN YLTPLENSFH VQPNFVLPQN EIPNYHLSNI LGTLPNFHYP SAGHDQFAPP  60
SCLSSNSTTS DEADELQFNI IDERKHRRMI SNRESARRSR MRKQKHLDEL WSQVVRLRTE  120
NHNLVDKLNH VSESHDKVVQ ENARLKEETF DLRQMVADMQ IGNSFPCNME DLCEIPCNTS  180
QHKDDDSSKI HD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.182311e-127flower| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g029400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448026.11e-142basic leucine zipper 43
SwissprotQ9FMC22e-38BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A072TYW41e-141A0A072TYW4_MEDTR; BZIP transcription factor
STRINGXP_004490322.12e-99(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-52basic leucine-zipper 42
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]