PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g031620.1

Common Name

MTR_7g031620

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 83aa MW: 9255.76 Da PI: 10.5375

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g031620.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	27.1	1.3e-08	10	75	1	71
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 ++Y++YA ++GF v+k +sk+ ++ + + t+ s+ k +++k + +++++ +t+Cka+l+ + + Medtr7g031620.1 10 EYYKSYAWSIGFGVSKLSSKTGDDGK--KYFTLAYSRGTKYVSKSK---NMLKPNPSIKTQCKARLNTSIR 75 69************9988874444..344444444444444444...5899**********987766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-6	10	75	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
MFSSKEKLIE YYKSYAWSIG FGVSKLSSKT GDDGKKYFTL AYSRGTKYVS KSKNMLKPNP 60 SIKTQCKARL NTSIRLDGIV TI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g031620.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024642129.1	6e-28	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	G7L4B0	7e-52	G7L4B0_MEDTR; FAR1 DNA-binding domain protein
STRING	AES78438	1e-52	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13793	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	2e-09	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Medtr7g031620.1
Entrez Gene	11440864

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]