PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g033800.1

Common Name

MTR_7g033800

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 173aa MW: 18676.9 Da PI: 5.6126

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g033800.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.2	7.7e-45	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el Medtr7g033800.1 11 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKEL 104 7********************************************************************************************* PP DUF260 95 allke 99 +++++ Medtr7g033800.1 105 DATNA 109 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.881	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-44	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MASSSAYSNS PCAACKFLRR KCMPDCIFAP YFPPEEPQKF ANVHKIFGAS NVSKLLNEVQ 60 PHQREDAVNS LAYEAEARIK DPVYGCVGAI SVLQRQVIRL QKELDATNAD LIRYTTCTEI 120 PNHDIAATRI GGEDGGGSSL GQSPPPAFYY PSPWNNNDPL GDGFHTGGGD NI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-65	2	120	2	119	LOB family transfactor Ramosa2.1
5ly0_B	6e-65	2	120	2	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g033800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	8e-98	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013448135.1	1e-127	LOB domain-containing protein 25
Swissprot	Q8L8Q3	2e-68	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A072TXJ1	1e-126	A0A072TXJ1_MEDTR; Lateral organ boundaries (LOB) domain protein
STRING	XP_004491980.1	2e-98	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	7e-71	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Medtr7g033800.1
Entrez Gene	25497949

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]