PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g035350.1
Common NameMTR_7g035350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 451aa    MW: 51394.9 Da    PI: 5.835
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g035350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-17228271448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      WT +Ed  lv++v+++G ++W  Ia+ m+ gR +kqc++rw+++l
  Medtr7g035350.1 228 WTSDEDRNLVQLVEKFGLNNWVEIAKSMN-GRIGKQCRERWYNHL 271
                      *****************************.*************97 PP
2Myb_DNA-binding54.72.4e-17277321147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      + +W++eEd ll++a+k  G++ W+ Ia++++ gRt++++k+rw++ 
  Medtr7g035350.1 277 KESWSEEEDILLIEAHKAVGNK-WAEIASRLP-GRTENSIKNRWNST 321
                      578*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.717220275IPR017930Myb domain
SuperFamilySSF466891.94E-31222318IPR009057Homeodomain-like
SMARTSM007176.2E-16224273IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-24227277IPR009057Homeodomain-like
PfamPF139217.5E-18228288No hitNo description
CDDcd001672.66E-16228271No hitNo description
PROSITE profilePS5129420.141276326IPR017930Myb domain
SMARTSM007172.2E-17276324IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-23278323IPR009057Homeodomain-like
CDDcd001671.08E-13279322No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVLLQPSSII SPTPSNYTCF LYNQSNEYPL NMANQYSRVS TVVPSYINPF SMIPAPSYRD  60
ANNNRSESNF FNDQIPMTFT PNNNKMEFMH EQLNTGKGIW DFSQQNLFQY SETSHSQVTP  120
SLSTSVVYER LNTEKGIWDF SQQNLFPYDE TSQSQVSPSL STSVVYDENP SLLVKPRHQA  180
NLSSSGGFVN LPQHNDEGLI LSEQKRQKRV DKTMEIQQRD FNTIKRLWTS DEDRNLVQLV  240
EKFGLNNWVE IAKSMNGRIG KQCRERWYNH LQPDIKKESW SEEEDILLIE AHKAVGNKWA  300
EIASRLPGRT ENSIKNRWNS TKRSLNATSR PNRRNSLRGT LLHNYVSEIT EAKNVQMELT  360
NSMNVVQIAN QTNFNITNTN PGPSHVRYET SNNGFGFEGS ATPVEEHGGY AEMMLNGDDG  420
MTSGYGTMNY GFGSYGMEFF PEFLPHGDNL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-402223264109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g035350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467911.21e-113transcription factor MYB118
TrEMBLA0A072TXN80.0A0A072TXN8_MEDTR; SWI3, ADA2, N-CoR and tfiiib DNA-binding domain protein
STRINGAES786301e-135(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-50myb domain protein 98
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]