PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g046260.1
Common NameMTR_7g046260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 236aa    MW: 26195.5 Da    PI: 4.9762
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g046260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-1860110256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Medtr7g046260.1  60 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 110
                      69****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-1360110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3160118IPR001471AP2/ERF domain
SMARTSM003808.0E-3760123IPR001471AP2/ERF domain
PROSITE profilePS5103223.20960117IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2160118IPR016177DNA-binding domain
PRINTSPR003672.4E-106172IPR001471AP2/ERF domain
CDDcd000181.52E-3261119No hitNo description
PRINTSPR003672.4E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MENDANENFF STSSSSTPTS SNSNSNSNSS TNLETKNNPQ NGNKKSKKRE RNENDTKHPT  60
YRGVRMRAWG KWVSEIREPR KKSRIWLGTY PTAEMAARAH DVAALAIKGH SAYLNFPNLA  120
QNLPRPSTTS PKDIQVAAAK AAAIVFEEIK EDQDQDQDQV SFSTLSSIDN VQESNSSSPS  180
TTATTNDDID DTLFDLPDLF PDGKNGILSY YSSWHLCAVD SGLRLEEQLS SWEYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-18561181073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g046260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445910.0AC144591.11 Medicago truncatula clone mth2-5f17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622605.11e-175ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ75e-64ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLG7KUW71e-173G7KUW7_MEDTR; AP2/ERF domain transcription factor
STRINGAES788231e-174(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.17e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]