PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g050385.1

Common Name

MTR_7g050385

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 235aa MW: 26566.8 Da PI: 9.296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g050385.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.2	4.6e-07	140	219	7	91
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 A+++GF+v+++ s + + ++v ++g+++ +k+k +++t+ + ++gC k++ k d+ w+++ l+ HnHe++p Medtr7g050385.1 140 ANRAGFTVVIKISCEG----GNAMLELVYERSGEHKVSKRK--VKHETTGSRKCGCLFKVRGYVVKeDNAWKLAILNGVHNHEMVP 219 899****9987776....345788899999999998888..7888999999999999886665569*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08731	6.8E-5	165	217	IPR014842	Transcription factor AFT

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MVLLAPKSTL KWLDNRHNLI NLGNFNEDVY MPIPLDITPS KSNQVPNLSP LLMIYIPSYI 60 MMMASYIDID YTKIAQYRVE APIKVEASVK VEAFVKVEAS SVNSDVWKLC DNKLDTTHFF 120 STRGTWKDKD KLLGWVRRQA NRAGFTVVIK ISCEGGNAML ELVYERSGEH KVSKRKVKHE 180 TTGSRKCGCL FKVRGYVVKE DNAWKLAILN GVHNHEMVPY VAGNLLVGRQ EDCT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g050385.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR956402	1e-164	CR956402.15 M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A072U013	1e-175	A0A072U013_MEDTR; FAR1 DNA-binding domain protein
STRING	AES68811	2e-66	(Medicago truncatula)

Link Out ? help Back to Top
Phytozome	Medtr7g050385.1
Entrez Gene	25498153

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]