PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g050640.1
Common NameMTR_7g050640
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 117aa    MW: 13934.5 Da    PI: 10.6885
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g050640.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.2e-19131051100
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      ffk+  +  +l  g l++p+kf+e++ +    +  + l+++sg +W++ l   k +g+++++kGWk+F+k ++L +   ++Fk++++s f  +v
  Medtr7g050640.1  13 FFKII-TIQSLLVGKLMIPRKFVEKYRNC--LPNAIYLKTPSGAKWKLDL--VKIDGKIWFQKGWKQFAKYHNLAQYHLLIFKYERTSHF--HV 99 
                      56655.455555567***********755..7778***************..********************************999999..** PP

                      EEE-SS CS
               B3  95 kvfrks 100
                      ++f+ks
  Medtr7g050640.1 100 HIFEKS 105
                      **9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.87E-259105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-2510105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-1611102No hitNo description
PROSITE profilePS5086313.32412105IPR003340B3 DNA binding domain
SMARTSM010196.3E-1713105IPR003340B3 DNA binding domain
PfamPF023623.4E-1613104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MANEFPHVKQ FHFFKIITIQ SLLVGKLMIP RKFVEKYRNC LPNAIYLKTP SGAKWKLDLV  60
KIDGKIWFQK GWKQFAKYHN LAQYHLLIFK YERTSHFHVH IFEKSANRDK IPFPNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g050640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1691801e-149AC169180.3 Medicago truncatula chromosome 7 BAC clone mth2-5f24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622663.19e-43B3 domain-containing transcription factor VRN1
TrEMBLG7KVW12e-80G7KVW1_MEDTR; B3 DNA-binding domain protein
STRINGAES788883e-81(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-19B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]