PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g053410.1
Common NameMTR_7g053410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 518aa    MW: 56806.7 Da    PI: 5.7344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g053410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-09327374455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Medtr7g053410.1 327 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 374
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.32E-10321378No hitNo description
SuperFamilySSF474596.67E-17321392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663323373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-17323391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-6327374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10329379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MENQFFSNNH FDQSQPSSMP TWQSISSEQQ NQDCFYTPID QCVNQFDSAL SSMVSSPAAS  60
NSNMSNDNFV IRELIGKLGN IGNCSDEISQ TLVAANSYIN SNNNTSCYNT PLNSPPKLNI  120
STMAMNSTVA EFSTDPGFAE RAAKFSCFGS RSFNGRTTQL SQSQRSTPLL ENGKLSRVSS  180
SPSLKELGSQ SQIGIQENMN CSTQLQDQIE LNNSQEESTI SENGVKPSPY VNTRKRKVSS  240
KGKTKETSTS SNPPMACEAE DSNAKRMKTN EGEKIENGKV KAEDESKGGT NSNNGGDEKQ  300
NKSNSKPPEA PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKLLQDLV PGCNKVTGKA  360
LMLDEIINYV QSLQRQVEFL SMKLATVNTR VDFSIESLIS KDMFQSNNSL AHPIFPLDSS  420
APSYYGQQQQ QNPAIHNNIS NGTVTHNSVD PLDGGLCQNL GMHLSSLSGF NEAGSQYPLT  480
FSEDDLNTIV QMGFGQTDNR KTPIQFQNLN GTNQLPL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.162100.0root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g053410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448523.10.0transcription factor bHLH62
TrEMBLA0A072U9Q40.0A0A072U9Q4_MEDTR; BHLH transcription factor
STRINGXP_004492265.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-108bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]