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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Medtr7g057230.1 | ||||||||
| Common Name | MTR_7g057230 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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| Family | GRAS | ||||||||
| Protein Properties | Length: 658aa MW: 73671.1 Da PI: 6.5157 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 294.3 | 3.2e-90 | 292 | 656 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
++ L+e+A+a+s+g++ a+++L+ s++++p+ + l +++ AL++r+++ + + p+ e s+e++ +++l+++ s ++k+s+
Medtr7g057230.1 292 KQSLMEAATAISEGKMDYAKEILSSFSHTQNPKLKFDSWLLDCIASALKSRVNN----IENPPPVAEL---FSKEHTDSTQLLFDNSLCFKLSF 378
578**************************************************9....5544444444...4999999**************** PP
GRAS 96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
++aN aIlea+ ++ + + ++Dfdi++G Q+++Llq+L +R +g+p +l+iT+v + ++e+l+++ge L + A++lg+ fef++ v
Medtr7g057230.1 379 MAANIAILEAAFKDttksvKNLCVVDFDIGNGKQYINLLQELHARLNGSPaMLKITTVTV--NIDNENLKTIGELLVREAKSLGIGFEFKP-VN 469
*********9866657556777************************877769********..56***************************.79 PP
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
+l++l+ e+L++++++ laVn++++l +++desvs+e++rd++L++vkslsP +v++ eqe+++n++ F+ r++e+l+yy +l++s+e + r
Medtr7g057230.1 470 LKLTELTRESLNCNSEDILAVNFAFNLCKIPDESVSTENPRDTLLRQVKSLSPSIVTILEQELNTNTALFVSRVAETLSYYNTLLESIEFAMDR 563
99******************************************************************************************** PP
GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
s +r k+E+ l+r+ +nvvaceg++r+er+e ++kWr+r+++aGF+ p+s k+++++ + l + + +v+ee+g +++gWk+++L+++S
Medtr7g057230.1 564 GSYKRLKLEKG-LSRKMRNVVACEGRDRVERCEVFGKWRARMSMAGFRLNPMSRKVTESITSRLIQGS--RITVHEENGGVCFGWKGKALTVAS 654
***********.*********************************************99988776655..489********************* PP
GRAS 372 aW 373
+W
Medtr7g057230.1 655 SW 656
** PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 39.531 | 265 | 639 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.1E-87 | 292 | 656 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 658 aa Download sequence Send to blast |
MFSPGFTAGG GSSDFYDGST SNRSSITLPS SMNNNNIYNY NFSTVAQNLH HPYYQTQQEQ 60 QIPSISINPS SQIIQSQTSN LIGKRTFDEF QSQNQNILYN NNNLNLRNHN YINNNNTVLS 120 NLLIRSVKPR NFQHSSPMSP LTPKDFTSSP LEFISPSFSS PHLGMSLCSN PNIQNPLPMN 180 NSILQNTNFS YENSDFAEIQ STVVPTSHVP DKKMMYELEK KLHEDIDDEE EWSLVVSGIM 240 NTNNEWSETI RNLNSFEHNP IQKPISFSPP FSTTSLNSSP SSIVSPASEF SKQSLMEAAT 300 AISEGKMDYA KEILSSFSHT QNPKLKFDSW LLDCIASALK SRVNNIENPP PVAELFSKEH 360 TDSTQLLFDN SLCFKLSFMA ANIAILEAAF KDTTKSVKNL CVVDFDIGNG KQYINLLQEL 420 HARLNGSPAM LKITTVTVNI DNENLKTIGE LLVREAKSLG IGFEFKPVNL KLTELTRESL 480 NCNSEDILAV NFAFNLCKIP DESVSTENPR DTLLRQVKSL SPSIVTILEQ ELNTNTALFV 540 SRVAETLSYY NTLLESIEFA MDRGSYKRLK LEKGLSRKMR NVVACEGRDR VERCEVFGKW 600 RARMSMAGFR LNPMSRKVTE SITSRLIQGS RITVHEENGG VCFGWKGKAL TVASSWC* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 1e-33 | 335 | 615 | 47 | 329 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Medtr7g057230.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC146793 | 0.0 | AC146793.7 Medicago truncatula clone mth2-10p9, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_003622913.2 | 0.0 | scarecrow-like protein 8 | ||||
| TrEMBL | G7L175 | 0.0 | G7L175_MEDTR; GRAS family transcription factor | ||||
| STRING | AES79131 | 0.0 | (Medicago truncatula) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF6266 | 31 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G52510.1 | 1e-120 | SCARECROW-like 8 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Medtr7g057230.1 |
| Entrez Gene | 11434943 |
| Publications ? help Back to Top | |||
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