PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g057230.1
Common NameMTR_7g057230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 658aa    MW: 73671.1 Da    PI: 6.5157
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g057230.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.33.2e-902926562373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++ L+e+A+a+s+g++  a+++L+  s++++p+ +    l  +++ AL++r+++    + +  p+ e     s+e++ +++l+++ s ++k+s+
  Medtr7g057230.1 292 KQSLMEAATAISEGKMDYAKEILSSFSHTQNPKLKFDSWLLDCIASALKSRVNN----IENPPPVAEL---FSKEHTDSTQLLFDNSLCFKLSF 378
                      578**************************************************9....5544444444...4999999**************** PP

             GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                      ++aN aIlea+ ++     + + ++Dfdi++G Q+++Llq+L +R +g+p +l+iT+v    + ++e+l+++ge L + A++lg+ fef++ v 
  Medtr7g057230.1 379 MAANIAILEAAFKDttksvKNLCVVDFDIGNGKQYINLLQELHARLNGSPaMLKITTVTV--NIDNENLKTIGELLVREAKSLGIGFEFKP-VN 469
                      *********9866657556777************************877769********..56***************************.79 PP

             GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +l++l+ e+L++++++ laVn++++l +++desvs+e++rd++L++vkslsP +v++ eqe+++n++ F+ r++e+l+yy +l++s+e  + r
  Medtr7g057230.1 470 LKLTELTRESLNCNSEDILAVNFAFNLCKIPDESVSTENPRDTLLRQVKSLSPSIVTILEQELNTNTALFVSRVAETLSYYNTLLESIEFAMDR 563
                      99******************************************************************************************** PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       s +r k+E+  l+r+ +nvvaceg++r+er+e ++kWr+r+++aGF+  p+s k+++++ + l + +    +v+ee+g +++gWk+++L+++S
  Medtr7g057230.1 564 GSYKRLKLEKG-LSRKMRNVVACEGRDRVERCEVFGKWRARMSMAGFRLNPMSRKVTESITSRLIQGS--RITVHEENGGVCFGWKGKALTVAS 654
                      ***********.*********************************************99988776655..489********************* PP

             GRAS 372 aW 373
                      +W
  Medtr7g057230.1 655 SW 656
                      ** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.531265639IPR005202Transcription factor GRAS
PfamPF035141.1E-87292656IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MFSPGFTAGG GSSDFYDGST SNRSSITLPS SMNNNNIYNY NFSTVAQNLH HPYYQTQQEQ  60
QIPSISINPS SQIIQSQTSN LIGKRTFDEF QSQNQNILYN NNNLNLRNHN YINNNNTVLS  120
NLLIRSVKPR NFQHSSPMSP LTPKDFTSSP LEFISPSFSS PHLGMSLCSN PNIQNPLPMN  180
NSILQNTNFS YENSDFAEIQ STVVPTSHVP DKKMMYELEK KLHEDIDDEE EWSLVVSGIM  240
NTNNEWSETI RNLNSFEHNP IQKPISFSPP FSTTSLNSSP SSIVSPASEF SKQSLMEAAT  300
AISEGKMDYA KEILSSFSHT QNPKLKFDSW LLDCIASALK SRVNNIENPP PVAELFSKEH  360
TDSTQLLFDN SLCFKLSFMA ANIAILEAAF KDTTKSVKNL CVVDFDIGNG KQYINLLQEL  420
HARLNGSPAM LKITTVTVNI DNENLKTIGE LLVREAKSLG IGFEFKPVNL KLTELTRESL  480
NCNSEDILAV NFAFNLCKIP DESVSTENPR DTLLRQVKSL SPSIVTILEQ ELNTNTALFV  540
SRVAETLSYY NTLLESIEFA MDRGSYKRLK LEKGLSRKMR NVVACEGRDR VERCEVFGKW  600
RARMSMAGFR LNPMSRKVTE SITSRLIQGS RITVHEENGG VCFGWKGKAL TVASSWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3333561547329GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g057230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1467930.0AC146793.7 Medicago truncatula clone mth2-10p9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622913.20.0scarecrow-like protein 8
TrEMBLG7L1750.0G7L175_MEDTR; GRAS family transcription factor
STRINGAES791310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-120SCARECROW-like 8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]