PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g060350.1
Common NameMTR_046s0004, MTR_7g060350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 182aa    MW: 20160.5 Da    PI: 10.4219
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g060350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.57.6e-07911413890
             FAR1  38 egkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       gk++++kk   ++++t+ + ++gC  ++   +++ +++w+++ ++  HnH++ 
  Medtr7g060350.1  91 AGKKKKKKK---TKHETTGSRKCGCMFMVSGYLSRkTKQWRLNIVNGVHNHAME 141
                      344444444...4778888888999888887776669**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF087314.6E-688139IPR014842Transcription factor AFT
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVENAEDGLG ETKSNFVEKS GDVKHPKVEV KPNIDGASVH VEASLYVDSG ILPLHANEVD  60
TARFFPTTLN EKIGMTCLIG YIVKKISSQS AGKKKKKKKT KHETTGSRKC GCMFMVSGYL  120
SRKTKQWRLN IVNGVHNHAM ESALEGHMFV GRLKEDNKKI IRDLIKSKVH PKNIFIKGTP  180
K*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.143442e-38flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g060350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1927081e-160AC192708.2 Medicago truncatula chromosome 7 BAC clone mth2-9f19, complete sequence.
GenBankAC2075991e-160AC207599.3 Medicago truncatula chromosome 7 BAC clone mth2-101m23, complete sequence.
GenBankAC2255291e-160AC225529.14 Medicago truncatula clone mth2-129b5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024642241.12e-23uncharacterized protein LOC112422801
TrEMBLG7ZWW71e-130G7ZWW7_MEDTR; FAR1 DNA-binding domain protein
STRINGAES837051e-131(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]