PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g060630.1
Common NameMTR_7g060630
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WOX
Protein Properties Length: 207aa    MW: 23876.8 Da    PI: 9.1828
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g060630.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.1e-20766357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++t+eql +Leel+++  r+psa ++++++++l    +++ ++V++WFqN++a++++
  Medtr7g060630.1  7 SRWSPTTEQLMILEELYRSgIRTPSAVQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 66
                     7*****************99*************************************996 PP
2Wus_type_Homeobox117.46.5e-38667364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++RW+Pt+eQ++iLeely+sG+rtP++ +iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk
    Medtr7g060630.1  6 SSRWSPTTEQLMILEELYRSGIRTPSAVQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67
                       79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.301267IPR001356Homeobox domain
SMARTSM003895.9E-4471IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-8766IPR009057Homeodomain-like
SuperFamilySSF466893.64E-11766IPR009057Homeodomain-like
PfamPF000461.6E-17766IPR001356Homeobox domain
CDDcd000860.00116867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSPPGSSRWS PTTEQLMILE ELYRSGIRTP SAVQIQQITT HLSFYGRIEG KNVFYWFQNH  60
KARDRQKLRR KLNKQLQLQQ QQQQQQQQQL HVHHCQLNHN NMISNHFVGS TFGYPFGSNA  120
QDFSFFNSPS LLFEGSVSAN TSEGEINCKW NGYNNQQSLM EKKDIAFSNY GWTTLMDNVN  180
HEAPSCCTKP LKTLDLFPLT TTRIKD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g060630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0169100.0KM016910.1 Medicago truncatula LOOSE-FLOWER (LOOSE-FLOWER) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623058.11e-155WUSCHEL-related homeobox 3
TrEMBLG7L3H01e-153G7L3H0_MEDTR; Putative transcription factor Homobox-WOX family
STRINGAES792761e-154(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106322940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-36WOX family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]