PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g061980.1
Common NameMTR_7g061980
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 122aa    MW: 13928.1 Da    PI: 8.5958
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g061980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.18.2e-2024111190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      kf+ +Y+  vGF vr++  +k+ ++g++ + ++vC keg +++ek+ + + + tr+  rt+C  +++++++ +gk ++ ++e+eHnH+l+
  Medtr7g061980.1  24 KFWLAYSLCVGFGVRVRFANKK-EDGSVSSCRLVCCKEGLKRKEKRYAYEGKYTRVDVRTNCPVRITLSRK-NGKLVILDFEEEHNHDLQ 111
                      69**************998886.9999********************9*********************99.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1624111IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MASSDVDCKP KIGMVFDSME EVNKFWLAYS LCVGFGVRVR FANKKEDGSV SSCRLVCCKE  60
GLKRKEKRYA YEGKYTRVDV RTNCPVRITL SRKNGKLVIL DFEEEHNHDL QNSETTHMLL  120
V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g061980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1568271e-171AC156827.4 Medicago truncatula chromosome 6 clone mth2-15c17, complete sequence.
GenBankAC1743751e-171AC174375.15 Medicago truncatula chromosome 6 clone mth2-56h19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629356.11e-70protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024632443.11e-70protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024632444.11e-70protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A072UAQ69e-85A0A072UAQ6_MEDTR; FAR1 DNA-binding domain protein
STRINGAES751835e-71(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.11e-15FAR1-related sequence 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]