PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g062540.1
Common NameMTR_7g062540
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 681aa    MW: 76165.4 Da    PI: 6.0851
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g062540.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-22116215197
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f kvlt+sd++++g +++ +k+a+e+     +++++ +++l+ +d+++ +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + ++
  Medtr7g062540.1 116 FSKVLTNSDTSTHGGFSVLRKHATEClpsldMSQSTPTQELVAKDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGHN 207
                      88****************************9555555669************************************************..3478 PP

                      E..EEEEE CS
               B3  90 felvvkvf 97 
                      +el+v+v+
  Medtr7g062540.1 208 GELRVGVR 215
                      88999997 PP
2Auxin_resp92.85.8e-31242323183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsse..rrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha++t++ F v+Y+Pr+  s+F+++v+k+++a+++k+svGmRfkm+f+++ds+e  +r+sGt++g +d+++ +W nSkWrsLk
  Medtr7g062540.1 242 ASHAVATQTLFVVYYKPRM--SQFIISVNKYMEAINQKFSVGMRFKMSFDGDDSPEtdKRFSGTIIGQEDISS-HWLNSKWRSLK 323
                      789***************7..9********************************9833567*********777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-38103245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-37108229IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-18114215No hitNo description
SMARTSM010193.9E-18116218IPR003340B3 DNA binding domain
PfamPF023622.9E-20116215IPR003340B3 DNA binding domain
PROSITE profilePS5086311.307116218IPR003340B3 DNA binding domain
PfamPF065073.2E-29242323IPR010525Auxin response factor
PfamPF023091.0E-7550606IPR033389AUX/IAA domain
SuperFamilySSF542771.28E-12568646No hitNo description
PROSITE profilePS5174526.056570651IPR000270PB1 domain
PfamPF023096.0E-6616654IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MMMNNGEEDE LYEQLWKACA GPHVEVPRAG QRVFYFPQGH MEQLEVSTNQ ELNQRIPLFK  60
LPNKILCRVV NVHLLAEQET DEVYAQITLV PESNQTEPTS LDPCPAEPPR PRTHSFSKVL  120
TNSDTSTHGG FSVLRKHATE CLPSLDMSQS TPTQELVAKD LHNYEWHFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLVAGDTF VFLRGHNGEL RVGVRHLASP QSCMPSSVIS GQSMHLGVLA  240
TASHAVATQT LFVVYYKPRM SQFIISVNKY MEAINQKFSV GMRFKMSFDG DDSPETDKRF  300
SGTIIGQEDI SSHWLNSKWR SLKVQWDDPA SIPRPDRISP WEIEPLMASV PTSIQPAVAK  360
YKRPRLPSEV PDFGDTTVGD STYWEAGLAQ SDITQVNNVL SENIRSDGMH FWHHKQTDNS  420
SSNGISRNPT DGSWLSSPHS SGPSHLCQDA IDDSKSVAVS AWPISKTHSE ILNNNDHMID  480
QVVKDNKKEA ATSCRLFGID LNDPRTNTHK VSEYSANAFG VTSEGCVATP ISRTDADQNK  540
FDISKASKER KQEQLPISPN ETQSKQTNSR SCTKVQMQGV AVGRAVDLTA LDGYDQLIDE  600
LEKLFDIKGQ IQPRNKWEIV FTDDEGDMML VGDDPWPEFC NMVRRIFICS SQDVHKMSSG  660
TKSPISSLEE TVISSDTAEI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-164934617355Auxin response factor 1
4ldw_A1e-164934617355Auxin response factor 1
4ldw_B1e-164934617355Auxin response factor 1
4ldx_A1e-163934617355Auxin response factor 1
4ldx_B1e-163934617355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.98900.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g062540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150375e-59AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448901.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A072U1C10.0A0A072U1C1_MEDTR; Auxin response factor
STRINGXP_007140507.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]