PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g063220.1
Common NameMTR_7g063220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 139aa    MW: 15810.5 Da    PI: 6.9325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g063220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.4e-052648123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ Fs+   L  H++ H
  Medtr7g063220.1 26 YSCTFCKRGFSNAQALGGHMNIH 48
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.2E-52451IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.42E-62452No hitNo description
PROSITE profilePS5015711.3232653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEYTQNPNKS DQIRWSSDDP GQVRSYSCTF CKRGFSNAQA LGGHMNIHRR DRAKLKQQSS  60
EENLLSLDIA NKNPNDQGDL EENHETQRGK LITTKELPHS SSFVGTQRIE EKKCDLDLEL  120
RLGYQPMDSS TLSTRSFF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14856RRDRAKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.95650.0root
Function -- GeneRIF ? help Back to Top
  1. RSD may influence symbiosome development in part by repressing transcription of VAMP721a and modifying vesicle trafficking in nodule cells.
    [PMID: 24082011]
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g063220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX3078630.0JX307863.1 Medicago truncatula RSD (RSD) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626035.11e-100transcriptional regulator TAC1
TrEMBLA0A072U0P23e-99A0A072U0P2_MEDTR; C2H2 and C2HC zinc finger protein
TrEMBLA0A396H3993e-99A0A396H399_MEDTR; Putative transcription factor C2H2 family
STRINGXP_004492174.19e-69(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-18C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Sinharoy S, et al.
    The C2H2 transcription factor regulator of symbiosome differentiation represses transcription of the secretory pathway gene VAMP721a and promotes symbiosome development in Medicago truncatula.
    Plant Cell, 2013. 25(9): p. 3584-601
    [PMID:24082011]