PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g069590.1

Common Name

MTR_7g069590

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 154aa MW: 17516.1 Da PI: 9.1192

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g069590.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.3e-10	41	81	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f L++++P Kl+ +++Le+A++Y+k L Medtr7g069590.1 41 ARERRHRISDRFKILQSMIPGG-----SKLDTVSMLEEAIHYVKFL 81 699***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.116	32	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.13E-13	37	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.4E-12	38	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	38	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.78E-13	38	85	No hit	No description
Pfam	PF00010	5.5E-8	41	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MECNTISYSY GSCSKRKEKK GVKKSKGSSV KLSTDPQSVA ARERRHRISD RFKILQSMIP 60 GGSKLDTVSM LEEAIHYVKF LKKQIWLHET LINFVDDIGE SHMLLPQDYS SNDKNIPSGT 120 FESMQNLPQL PLEQFCFQGD KDIKTIFDAT MKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g069590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT967302	0.0	CT967302.9 M.truncatula DNA sequence from clone MTH2-146M13 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003623323.1	1e-112	transcription factor LAX PANICLE 1
Swissprot	Q9M041	4e-31	BH140_ARATH; Transcription factor bHLH140
TrEMBL	G7KSC0	1e-110	G7KSC0_MEDTR; Helix loop helix DNA-binding domain protein
STRING	AES79541	1e-111	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7167	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	1e-30	APRATAXIN-like

Link Out ? help Back to Top
Phytozome	Medtr7g069590.1
Entrez Gene	11412129

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]