PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g070643.1
Common NameMTR_7g070643
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 185aa    MW: 21164.4 Da    PI: 11.0057
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g070643.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer57.72.8e-1879120345
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaA 45 
                      ++rY eC+kNhA+s GghavDGC+Ef+++ geegt +   CaA
  Medtr7g070643.1  79 TMRYLECQKNHAVSFGGHAVDGCCEFIAA-GEEGTLEVAICAA 120
                      79**************************9.9999*******99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.6E-1680120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.5E-1581120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1081126IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.07382131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSSNPLMNDH HMIFLFFLHL LPSISSSSSI FIHLYAHLNP EHLYSFKLKS YYDNKSSRSK  60
LTVVVDGRKG NGNGGFVSTM RYLECQKNHA VSFGGHAVDG CCEFIAAGEE GTLEVAICAA  120
WRIQNSGIRI LIPPSCFCVV VIYGFWKKKK KKKKKKKKKK KKKKKKKKKK KKKKKKKKKK  180
KKKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169183KKKKKKKKKKKKKKR
2170183KKKKKKKKKKKKKR
3173182KKKKKKKKKK
4175183KKKKKKKKR
5177183KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g070643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1482911e-141AC148291.22 Medicago truncatula clone mth2-14n3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072U0M51e-128A0A072U0M5_MEDTR; ZF-HD protein dimerization region protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.16e-15homeobox protein 28
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]