PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g074790.1
Common NameMTR_7g074790
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 230aa    MW: 25998.5 Da    PI: 10.0432
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g074790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.69.8e-142497174
             FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dg 74
                     +fY +Y+ + GF+vr++ ++++ ++g++ + +fvC keg r++e+k + + + +r etrt+C a+++++ ++ ++
  Medtr7g074790.1 24 QFYLAYGLREGFRVRVRFTNRK-KDGSVSSCRFVCCKEGIRKKEDKCAYEGKIRRGETRTKCLARITLSSKNgKD 97
                     6***************998886.8999********************99*******************9997444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.0E-112497IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MASSNDDWKP RLGIEFDTRE EAEQFYLAYG LREGFRVRVR FTNRKKDGSV SSCRFVCCKE  60
GIRKKEDKCA YEGKIRRGET RTKCLARITL SSKNGKDNHM LRSHRKITEV QAYGIDMADD  120
SGLRQKKVYQ LMSTHAGHSA NVGFTEVDVR NYITTKRQRS APPSKHAQSS RVPPQRSSQV  180
RELTTNMVNG VSCSAPPTYE PPLARENMFV SYTTMLMAPF DDTNIGALL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g074790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558901e-159AC155890.2 Medicago truncatula chromosome 7 clone mth2-49p3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629942.11e-104protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024630170.14e-99protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024630864.14e-99protein FAR1-RELATED SEQUENCE 5-like
TrEMBLG7KZB31e-172G7KZB3_MEDTR; FAR1 DNA-binding domain protein
STRINGAES799291e-173(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-18FAR1-related sequence 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]