PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g074915.1
Common NameMTR_7g074915
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 125aa    MW: 14102.8 Da    PI: 6.3705
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g074915.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26025.15e-086286124
           DUF260  1 aCaaCkvlrrkCakd.Cvlapyfpa 24
                     +CaaCk+lrr+C+ d C+la yfp 
  Medtr7g074915.1 62 PCAACKILRRRCTVDkCALASYFPP 86
                     7***********8655*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.04261124IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-66286IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MDSSTILNQL FSTIQVFNWL IDYEIEISSS TDFFLQLCGA RFPDFFLDRF LPGPPQVVVM  60
SPCAACKILR RRCTVDKCAL ASYFPPILIL PSLPLLIEFL VLATLKLKMN NIEKLNLIIS  120
INNM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g074915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492681e-55AC149268.21 Medicago truncatula clone mth2-94j16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A072UBV42e-83A0A072UBV4_MEDTR; DUF260 family protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-09LOB domain-containing protein 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]