PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g075230.1
Common NameMTR_7g075230
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LBD
Protein Properties Length: 198aa    MW: 21929.8 Da    PI: 7.0296
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g075230.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.51.4e-35121141100
           DUF260   1 aCaaCkvlrrkCakd.Cvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                      +C aCk+lrrkC+k+ C++apyf ++   +++fa+vhk+FGasn  kll+++p ++r da+ +l+yeA ara dPvyG+v+++++lqqq+ +l+
  Medtr7g075230.1  12 PCGACKFLRRKCVKGcCIFAPYFESSGqgSAHFAAVHKVFGASNAAKLLTRIPVHKRLDAVVTLCYEALARATDPVYGCVAHLFALQQQVVELQ 105
                      7*************9789*****7744257**************************************************************** PP

           DUF260  92 aelallkee 100
                      aela+++++
  Medtr7g075230.1 106 AELAYVQAR 114
                      *****9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.14711115IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3512112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDLGCGDEGG GPCGACKFLR RKCVKGCCIF APYFESSGQG SAHFAAVHKV FGASNAAKLL  60
TRIPVHKRLD AVVTLCYEAL ARATDPVYGC VAHLFALQQQ VVELQAELAY VQARLSILNR  120
ISEDPQFQQP QSSSISPTLQ SSLLHHFSSN NETSYMSMHF GHPLQNQYHP TPFENPSYYS  180
YNQQLHDQEF QALPREF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3291088104LOB family transfactor Ramosa2.1
5ly0_B3e-3291088104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g075230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623743.11e-146LOB domain-containing protein 19
SwissprotO221326e-52LBD19_ARATH; LOB domain-containing protein 19
SwissprotO813222e-51LBD31_ARATH; LOB domain-containing protein 31
TrEMBLG7L0B71e-145G7L0B7_MEDTR; LOB domain protein
STRINGAES799611e-145(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.12e-42LOB domain-containing protein 19
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]