PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g075850.1
Common NameMTR_7g075850
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28522.4 Da    PI: 9.3326
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g075850.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.26.9e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gkl e++s
  Medtr7g075850.1  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFAS 59
                     79***********************************************86 PP
2K-box103.13.7e-3478173499
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      s++ +++e+++++++qe++kLk+++e+Lq++qR+llGedL++L++keLq+Le+qLe +l + R++K+++++eq+eel++ke+ l ++nk+Lr k
  Medtr7g075850.1  78 SQNDNVNEHETQNWYQEMSKLKAKYESLQKSQRQLLGEDLGPLNMKELQNLEKQLEGALAQARQRKTQIMVEQMEELKRKERHLGDINKQLRFK 171
                      5666699*************************************************************************************99 PP

            K-box  98 le 99 
                      le
  Medtr7g075850.1 172 LE 173
                      86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.955161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-33293IPR002100Transcription factor, MADS-box
CDDcd002651.09E-41275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-32323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-323859IPR002100Transcription factor, MADS-box
PfamPF014866.2E-3084172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.84388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLSEFASS  60
TSGIGKTLER YQRCSFTSQN DNVNEHETQN WYQEMSKLKA KYESLQKSQR QLLGEDLGPL  120
NMKELQNLEK QLEGALAQAR QRKTQIMVEQ MEELKRKERH LGDINKQLRF KLESDGFNLK  180
AIESLWSSTH SATAVAGGGN FPFQPSETNP MDCQTEPFLQ IGYQNYVQAE ASSAPKNMVG  240
ETSFIQGWML *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-219317622104Developmental protein SEPALLATA 3
4ox0_B2e-219317622104Developmental protein SEPALLATA 3
4ox0_C2e-219317622104Developmental protein SEPALLATA 3
4ox0_D2e-219317622104Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g075850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1470141e-100AC147014.29 Medicago truncatula clone mth2-164l15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623805.20.0agamous-like MADS-box protein AGL6
SwissprotQ8LLR11e-131MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLG7L1F40.0G7L1F4_MEDTR; MADS-box transcription factor
STRINGAES800230.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-113AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]