PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g076840.1
Common NameMTR_7g076840
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 252aa    MW: 28427.3 Da    PI: 4.6555
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g076840.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09125154230
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPk.a 30 
                      +++ + +ErrRR+r+N++++ Lr+++Pk +
  Medtr7g076840.1 125 KAKSKRVERRRRKRLNDRLSMLRSIVPKiS 154
                      6777899********************955 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-8122162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.578123203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-7123155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-7124154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.73E-4180221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MELGFLEELL APRKDTWNTL SNGLNELLLP NGWTFDSFDE NLLINPSLNP SFASFSTPLD  60
HRFECPYGTD FDDSAPLLPQ QESIEEFGFV GSENKSLEQS KISCKVEEQV SETPVFNMGL  120
CDEKKAKSKR VERRRRKRLN DRLSMLRSIV PKISKINILG ISKELKPNEV MFDVEREQDT  180
RISICCATKP GLLLSTVNTL EALGLEIHQC VISSFNDFSL QASCSEVSNC ITACSDGYRI  240
WQNYTVSLSF Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123138KKAKSKRVERRRRKRL
2131138ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.13941e-111root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g076840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1238991e-140AC123899.15 Medicago truncatula clone mth2-33n6, complete sequence.
GenBankAC1591441e-140AC159144.4 Medicago truncatula chromosome 7 clone mth2-41a4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453691.11e-137transcription factor bHLH93 isoform X2
TrEMBLG7L3K20.0G7L3K2_MEDTR; Transcription factor bHLH93-like protein, putative
STRINGAES801220.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-24beta HLH protein 93
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]