PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g078120.3
Common NameMTR_7g078120, MtrDRAFT_AC149204g12v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 601aa    MW: 67632.7 Da    PI: 6.4296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g078120.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09483532147
                      TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      r  WT+eE+++++d+vk  +       W+ I  t++ ++++++++s+++++
  Medtr7g078120.3 483 RRCWTAEEEKKFKDVVKSNPASldrcFWDDIFTTFP-KKSRESLVSYYFNV 532
                      568*****************99**************.9**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101116.893165IPR001606ARID DNA-binding domain
SMARTSM005010.0012266IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.608.7E-12567IPR001606ARID DNA-binding domain
PfamPF013881.1E-7559IPR001606ARID DNA-binding domain
SuperFamilySSF467746.41E-14669IPR001606ARID DNA-binding domain
SMARTSM011897.6E-5387437IPR000949ELM2 domain
PfamPF002498.4E-6483532IPR001005SANT/Myb domain
CDDcd001675.22E-4486533No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MLGSEQTLDL YKLFMVVKDK GGYDVVCKNE LWDLVGEEYG LGVKVGSSVK LVYSKYLSGL  60
ETPLKNVVDG EFPKRDLVGD RVKFGERLTE LQAELVLDDY GEGDVGDEVK SVYGCRKKLC  120
DTNRVKVVNP ELNASELEKV YEYIDGRKSC GTNKMKDTNL VSNMAKKVES EGLVDVLMQD  180
CKTNETSLRK LVNQNAAMEI MDDVSDVANS MPGLSDGSKS CANDDANDSG DDVLMLDPSS  240
VNRESFGRKR KRDDLMSEMQ SWVIRTAKNP CDPVLGSMPE KSKWKSYGNQ EIWKKVLLFR  300
EAAFLKKDFG SDCEKLSWLA QRMHPSMYDV NLGVNYNLRQ RIKRDNGVLV GKSASILQRT  360
PDSEAKEKLL DSCVPESILD APPTVNIPLG PNHQAEVPEW TGTTHKSDSK WLGTQIWPLQ  420
IVKSKLLEGE PVGKGRQDSC RCQVQGSVEC VRFHIAEKSA KLKLEIGVAF YQWNLDKAGE  480
EVRRCWTAEE EKKFKDVVKS NPASLDRCFW DDIFTTFPKK SRESLVSYYF NVFLLQRRGY  540
QNRHTPDNID SDDEESEFTP LKGSFGHQTD KSNSFTLLSP KKPQPTPHTK GRQLVNGLKS  600
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g078120.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492040.0AC149204.1 Medicago truncatula chromosome 7 clone mth2-77n20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449346.10.0AT-rich interactive domain-containing protein 2
RefseqXP_024626172.10.0AT-rich interactive domain-containing protein 2
RefseqXP_024626173.10.0AT-rich interactive domain-containing protein 2
TrEMBLQ2HUC60.0Q2HUC6_MEDTR; AT-rich interactive domain protein
STRINGAES802190.0(Medicago truncatula)
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]