PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g079010.1
Common NameMTR_7g079010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 220aa    MW: 25005.2 Da    PI: 9.0942
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g079010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32140198159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  Medtr7g079010.1 140 LDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 198
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-33127198IPR003657WRKY domain
SuperFamilySSF1182902.75E-28134199IPR003657WRKY domain
PROSITE profilePS5081128.725135200IPR003657WRKY domain
SMARTSM007742.9E-38140199IPR003657WRKY domain
PfamPF031065.4E-26141198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MESQDPPNLT PPLMNIPSPQ TQNNNTSLPF FFTPSLQNYP LESQDQGLGG IEWGNFFLGQ  60
NNNNLLVGDA KETLKVDNIQ QCTSSSSNLV IHNNESGSYQ LHEEEKGNKL EEKRVKGGRV  120
KKTTKVPRFA FQTRSVDDIL DDGYRWRKYG QKAVKNSKYP RSYYRCTHHT CNVKKQVQRL  180
SKDTSIVVTT YEGIHNHPCE KLMETLTPLL KQIQFLASL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-25128197271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.232870.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g079010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477030.0BT147703.1 Medicago truncatula clone JCVI-FLMt-5C22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624078.11e-164probable WRKY transcription factor 75
SwissprotQ9FFS33e-56WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLG7L6N91e-163G7L6N9_MEDTR; WRKY family transcription factor
STRINGAES802961e-164(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.13e-55WRKY DNA-binding protein 24
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]