PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g079040.1
Common NameMTR_7g079040
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 329aa    MW: 36075.8 Da    PI: 6.1741
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g079040.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30154212259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+
  Medtr7g079040.1 154 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRTDPTMFIVTYTCEHNHP 212
                      79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-30147214IPR003657WRKY domain
PROSITE profilePS5081134.107148214IPR003657WRKY domain
SuperFamilySSF1182901.7E-25152214IPR003657WRKY domain
SMARTSM007743.2E-35153213IPR003657WRKY domain
PfamPF031062.6E-25155212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEEDWDLHAV VRGCSTISTT TPTSSVSSSS VFPLQPEPSC GYSSIFSSEQ KPQILSLSCS  60
TLPFEARSSI EELHELCKPF FSRSSQPLSL QTSPLFSSLS YSSASPRLAQ TQDKQQLQRS  120
KHSHQGGSLT NPRSKRRKNQ LKKVCQVPVE SLSSDIWAWR KYGQKPIKGS PYPRGYYRCS  180
SSKGCLARKQ VERNRTDPTM FIVTYTCEHN HPAPTHKNSL AGSTRQKPLT PPQGETNKDL  240
TKPSSPTTSG GEEEVQTQGD KSESREEKED SLMDDEEGDE FGLSDVVLSD DFFESLDEFG  300
FPDPFSSAIS IPNWVANTAA ATTAAGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-22140215480Disease resistance protein RRS1
5w3x_D3e-22140215480Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g079040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1573770.0AC157377.6 Medicago truncatula chromosome 7 BAC clone mth2-75b23, complete sequence.
GenBankAC1866770.0AC186677.3 Medicago truncatula chromosome 7 BAC clone mth2-44m6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624081.10.0WRKY transcription factor 22
SwissprotO046096e-80WRK22_ARATH; WRKY transcription factor 22
TrEMBLG7L6P20.0G7L6P2_MEDTR; Putative transcription factor WRKY family
STRINGAES802990.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-71WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  4. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  5. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  6. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  7. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]