PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g080000.1
Common NameMTR_7g080000
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 705aa    MW: 78032.8 Da    PI: 7.1584
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g080000.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30234290259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vkgse+prsYY+C +++C+v+kkvers+ d+++ ei+Y+g+Hnh 
  Medtr7g080000.1 234 QDGYNWRKYGQKQVKGSEYPRSYYKCNQSNCQVRKKVERSH-DGNIREIIYSGNHNHA 290
                      8****************************************.***************7 PP
2WRKY101.74.4e-32431489159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++++ k+v +tYeg+Hnhe
  Medtr7g080000.1 431 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHNIKYVLTTYEGKHNHE 489
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-27224292IPR003657WRKY domain
PROSITE profilePS5081124.099228292IPR003657WRKY domain
SuperFamilySSF1182902.09E-24230292IPR003657WRKY domain
SMARTSM007741.9E-31233291IPR003657WRKY domain
PfamPF031062.1E-23234289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-34416491IPR003657WRKY domain
SuperFamilySSF1182901.26E-27425491IPR003657WRKY domain
PROSITE profilePS5081137.31426491IPR003657WRKY domain
SMARTSM007742.1E-36431490IPR003657WRKY domain
PfamPF031064.5E-24432489IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MEQDNNNNNN NDKINNNNNE NKNGGGEINN VSYSKEGNFF DFSPKRSIAE RRGFNKINTG  60
LVRFGAATSL VSPATRSPWL TIPPGISPTA LLESPVMLLN SQAMPSPTTG SFTMLPPLAD  120
EGSMITSVKH KQVDVPTASF NFKHQANFDV DSLSPYFSSL NQVSNGGDRD SQMLVQDQQL  180
LDFSFPEDFP NDYLASDESI LLENSIHSKD IGQHHVLEAE QKEISHAAGA KTLQDGYNWR  240
KYGQKQVKGS EYPRSYYKCN QSNCQVRKKV ERSHDGNIRE IIYSGNHNHA KPNSSRRGSV  300
PSSDEMSENA EANETRGNIQ SRGKDAKHNP EWKPDGQERT SQPSDVTGLS DPMKRARSQG  360
MFESDDAQEH SSALDNHDGD KDGATPENNS DADSESKRRK KESYPVETML PRRAVRAPRV  420
IVQSESDIDV LDDGYRWRKY GQKVVKGNPN PRSYYKCTSA GCTVRKHVER ASHNIKYVLT  480
TYEGKHNHEV PAARNNNHSS SSANVLHRRA VIPSSETRRT LPSHFDRKPD FGNDFMRSSL  540
MGSFSNDMKF GASSSSQMNY SSLNNIVPYG AYGAIPDHVA VPQTGPIASM FPEFQMPPPL  600
NLPSSGNYSL AGINFNYEKP INSIQSYLSG QQLRDMDTRF LKGKQALNEE SSYAACAPSL  660
DHASTSHTPP YAACAPSLDH ASTSHTPPSP SQSIYQCVMQ NFPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-30233492878Probable WRKY transcription factor 4
2lex_A1e-30233492878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g080000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1481710.0AC148171.16 Medicago truncatula clone mth2-30a2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625147.10.0probable WRKY transcription factor 2
TrEMBLG7KRI10.0G7KRI1_MEDTR; WRKY family transcription factor
STRINGAES803900.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-88WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]