PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g081805.1
Common NameMTR_7g081805
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 209aa    MW: 23736.5 Da    PI: 6.7987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g081805.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-2060110255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +ykGVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeAa a+++a+ k++g
  Medtr7g081805.1  60 RYKGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYVTEEEAALAYDKAAFKMRG 110
                      8********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-3059120No hitNo description
SuperFamilySSF541715.82E-2360119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.4E-3260119IPR001471AP2/ERF domain
PROSITE profilePS5103224.32960118IPR001471AP2/ERF domain
SMARTSM003801.4E-3760124IPR001471AP2/ERF domain
PfamPF008471.7E-1460110IPR001471AP2/ERF domain
PRINTSPR003675.4E-136172IPR001471AP2/ERF domain
PRINTSPR003675.4E-13100120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MASTTNDSDF AYLEHIQQYL LFDDSSFLTS YQPSPSPKSD NESDTIVEAR EVNTPPIWKR  60
YKGVRRRPWG KFAAEIRDPK KNGARVWLGT YVTEEEAALA YDKAAFKMRG RKAKLNFPHL  120
IGSDVFTPEP EKEVVLKRES PEPSSSEESC ESSSPRLKRR RGTVDLLNKL AKNRCQAKVV  180
EIETASSHAN DFEQWVNELS DSSLIWFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2859123468ATERF1
3gcc_A1e-2859123468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.24490.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Highly expressed in cell culture, especially during the exponential phase. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g081805.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1431720.0BT143172.1 Medicago truncatula clone JCVI-FLMt-5M13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449425.11e-153ethylene-responsive transcription factor 1
SwissprotQ404765e-39ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLI3SRS41e-152I3SRS4_MEDTR; AP2-domain DNA-binding protein
STRINGXP_004492940.11e-103(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-36ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]