PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g081815.1
Common NameMTR_7g081815
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 208aa    MW: 23349.3 Da    PI: 8.2014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g081815.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-2060110255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +ykGVr+++ +g+++AeIrdp++ng  +r++lg++ t+eeAa a+++a+ k++g
  Medtr7g081815.1  60 RYKGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYVTEEEAALAYDKAAFKMRG 110
                      8********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-3159120No hitNo description
SuperFamilySSF541715.82E-2360119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-3260119IPR001471AP2/ERF domain
PROSITE profilePS5103224.32960118IPR001471AP2/ERF domain
PfamPF008471.7E-1460110IPR001471AP2/ERF domain
SMARTSM003801.4E-3760124IPR001471AP2/ERF domain
PRINTSPR003675.3E-136172IPR001471AP2/ERF domain
PRINTSPR003675.3E-13100120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MASTTKDSDL EYLEHIQQYL LFDDSSMLKS HQPFPSPKSD NDLDTTVEAR EVSMPPVWKR  60
YKGVRRRPWG KFAAEIRDPK KNGARVWLGT YVTEEEAALA YDKAAFKMRG RKAKLNFPHL  120
IGSDVSTSEP EREVVLKRES PEPSSSSSEG SCESVSPGLK RRRGMVDLLN KLAKNRSQVA  180
TVVGVEKASQ ANDFEQWVNE LNDCTLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2959123468ATERF1
3gcc_A9e-2959123468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.24490.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g081815.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1431720.0BT143172.1 Medicago truncatula clone JCVI-FLMt-5M13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449426.11e-153ethylene-responsive transcription factor 2
SwissprotQ404794e-39ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A072U1491e-152A0A072U149_MEDTR; AP2-domain DNA-binding protein
STRINGXP_004492940.11e-110(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-36ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]