PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g082780.1

Common Name

MTR_7g082780

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NF-YC

Protein Properties

Length: 226aa MW: 25556.9 Da PI: 4.6582

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g082780.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	36.3	1.2e-11	49	108	36	96
NF-YC 36 vkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 +m+s + l++kace+f+ +lt + l+a+e++ r +k +d+ +a+++td dfl ++ Medtr7g082780.1 49 EEMVSVDQ-LLMTKACEVFLKDLTNLALLNAKEKNERIVKPCDVVKAIKETDRMDFLKNVA 108 35778775.799*********************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.5E-10	57	107	IPR009072	Histone-fold
SuperFamily	SSF47113	3.19E-10	57	110	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDPAQAHFLF SLLFSLPNVW GVQGCMGIKV DFNINPVPSE LPLEAMKNEE MVSVDQLLMT 60 KACEVFLKDL TNLALLNAKE KNERIVKPCD VVKAIKETDR MDFLKNVASD VKRWDGTGIP 120 DPIWYTSQEG MELDYRNVEN FLYGNQTCFP HDADCMENPI MNMGNSNARW CEIFSHKSHE 180 SLDSYYTAKH DNTIKRAGGN QPRASPTLDD ATTKGTYGWS YWEGE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g082780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC144375	1e-100	AC144375.14 Medicago truncatula clone mth2-11p13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	G7KV87	1e-170	G7KV87_MEDTR; Uncharacterized protein
STRING	AES80618	1e-170	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF39074	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	3e-08	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Medtr7g082780.1
Entrez Gene	11427033

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]