PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g083210.1
Common NameMTR_7g083210
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 189aa    MW: 21074.1 Da    PI: 8.1417
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g083210.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000114163123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C++ F ++  L  H++ H
  Medtr7g083210.1 41 FQCQYCHRKFYTSQALGGHQNAH 63
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.65E-63868No hitNo description
PROSITE profilePS5015711.3654168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MADPSAIYEF LMKQQTSSSP SPPPPRTTRR SSQPQQPSRI FQCQYCHRKF YTSQALGGHQ  60
NAHKQERAAA RSKTINLNTT NNNNNVVPFS PPPQSYVSEQ HEQGGFFHHY PYWQQMEPIQ  120
FQTPQQHHVE AATNTFHPMV PCNGYASGFG ASSSTPHYVF SNNAASASTS PQFVDASDHV  180
NLDLTLHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g083210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1929570.0AC192957.2 Medicago truncatula chromosome 7 BAC clone mte1-32c12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624437.11e-138zinc finger protein KNUCKLES
TrEMBLG7KW551e-136G7KW55_MEDTR; Putative transcription factor C2H2 family
STRINGAES806551e-137(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1629333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-14C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]