PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g083330.1
Common NameMTR_7g083330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 195aa    MW: 22900.1 Da    PI: 9.4614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g083330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.39.6e-30181421127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrF+Ptd+elv++yL++kv +++l+    + e+d++++ePw+Lp+  ++++++ ++yfF  r+++ + +  ++r + +g W+   +++e 
  Medtr7g083330.1  18 LPVGFRFDPTDHELVDYYLTRKVCNQPLPN--LLLEFDVFQTEPWKLPRdnRTSSKHMRYYFFDIRNRRFE-NMDARR-AGNGEWRIYERNEEF 107
                      79*************************887..799*************52244445556688888877765.456666.588************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        ++++l+g k+t+v+ + + +++  t+W mhe+ 
  Medtr7g083330.1 108 ALSNNQLIGRKNTFVYRRIQGNQALMTQWRMHEFV 142
                      **9***************9**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3012147IPR003441NAC domain
PROSITE profilePS5100531.51618164IPR003441NAC domain
PfamPF023654.6E-1819142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAVDEKYSEL VSEDGMKLPV GFRFDPTDHE LVDYYLTRKV CNQPLPNLLL EFDVFQTEPW  60
KLPRDNRTSS KHMRYYFFDI RNRRFENMDA RRAGNGEWRI YERNEEFALS NNQLIGRKNT  120
FVYRRIQGNQ ALMTQWRMHE FVIGTIFHQT KVYSAVGAYR IFKMKVAKAE KKAPPTVIDF  180
TMEDASVSAP PPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-19121439140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.73090.0flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g083330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1450510.0BT145051.1 Medicago truncatula clone JCVI-FLMt-18K8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449453.11e-146NAC domain-containing protein 83
TrEMBLI3SX531e-144I3SX53_MEDTR; NAC transcription factor-like protein
STRINGXP_004492996.13e-57(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-24NAC domain containing protein 53
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]