PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g083360.1
Common NameMTR_7g083360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 156aa    MW: 18494.1 Da    PI: 9.335
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g083360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.61.6e-29101341127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrF+Ptd +lv +yL+kk+ +++++   +++e+d++++ePw+Lp + +++ e++++yfF  r+++ ++   ++r + +g W+   +++e 
  Medtr7g083360.1  10 LPAGFRFDPTDRQLVECYLTKKICNQPFPN--AMSEFDVFQTEPWSLPaEnRYSLEHRKYYFFDLRNRRFEN-MDARR-AGNGEWRIVKRKEEF 99 
                      799************************888..79*************9533666688899999999998764.55566.588************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127
                       +++++l+ +k+t v++ g+ +++  t+W mhe+ 
  Medtr7g083360.1 100 AHSNNQLIVIKNTYVYWIGQGNQALMTRWWMHEFV 134
                      *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-303153IPR003441NAC domain
PROSITE profilePS5100530.86710155IPR003441NAC domain
PfamPF023651.0E-1511134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAVANAEVDL PAGFRFDPTD RQLVECYLTK KICNQPFPNA MSEFDVFQTE PWSLPAENRY  60
SLEHRKYYFF DLRNRRFENM DARRAGNGEW RIVKRKEEFA HSNNQLIVIK NTYVYWIGQG  120
NQALMTRWWM HEFVIGRIYD PARGSPVAAY RIFKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-2241359140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g083360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626785.15e-88NAC domain-containing protein 83
TrEMBLA0A072U1D61e-113A0A072U1D6_MEDTR; NAC transcription factor-like protein
STRINGXP_004492996.12e-43(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-24NAC domain containing protein 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]