PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g083370.1
Common NameMTR_7g083370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 144aa    MW: 17385.7 Da    PI: 6.5178
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g083370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.78.9e-27101351128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrF+Ptd +lv +yL+kk+ +++l++  ++ e+d++++ePw+Lp + +++ e++++yfF  r+++ ++ + +   + +g W+    ++e 
  Medtr7g083370.1  10 LPAGFRFDPTDRQLVECYLTKKILNQPLPT--HLFEFDVFQTEPWRLPrEnRYSLEHRKYYFFDLRNRRFQNMDAT--PAGNGEWRMVEWNEEF 99 
                      799************************999..799************9533666688899***9999998764433..3478************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++l+  k+t v+++ + ++++ t+W mhe+ +
  Medtr7g083370.1 100 ALSNNQLIVRKNTYVYWRVQGSQAVMTQWWMHEFVI 135
                      **9******************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-283140IPR003441NAC domain
PROSITE profilePS5100528.58110143IPR003441NAC domain
PfamPF023651.4E-1411134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MAVANVEPDL PAGFRFDPTD RQLVECYLTK KILNQPLPTH LFEFDVFQTE PWRLPRENRY  60
SLEHRKYYFF DLRNRRFQNM DATPAGNGEW RMVEWNEEFA LSNNQLIVRK NTYVYWRVQG  120
SQAVMTQWWM HEFVITENHA SFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-2041359140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g083370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626785.16e-99NAC domain-containing protein 83
TrEMBLA0A072U2W31e-103A0A072U2W3_MEDTR; NAC transcription factor-like protein
STRINGXP_004492996.15e-40(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-21NAC family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]