PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g085260.1
Common NameMTR_7g085260
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 384aa    MW: 43927.1 Da    PI: 7.0103
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g085260.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.62e-56171471129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtd e++v+yL++kv+++k+++ ++i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++
  Medtr7g085260.1  17 LPPGFRFHPTDAEIIVCYLTEKVKNSKFSA-TAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIYH 109
                      79**************************99.88***************99999***************************************** PP

              NAM  95 k...kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      k    ++lvg+kktLvfykgrapkgekt+Wvmhe+rle
  Medtr7g085260.1 110 KgkgIQNLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 147
                      96544456***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6015172IPR003441NAC domain
PROSITE profilePS5100556.72217171IPR003441NAC domain
PfamPF023653.9E-2818146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEEPIVVNKG EDQTLDLPPG FRFHPTDAEI IVCYLTEKVK NSKFSATAIG EADLNKCEPW  60
DLPKKAKMGE KEWYFFCQKD RKYPTGMRTN RATESGYWKA TGKDKEIYHK GKGIQNLVGM  120
KKTLVFYKGR APKGEKTNWV MHEFRLEGKF ATHNLPNKEK DEWVVSRVFH KNTDVKKPQI  180
SSGLLRINSI GHDDLLDYSS LPPLMDPSYT NDDFKGITTN QQISSTKSQS DGYYLPSFSI  240
NNNQHQFLIK PEDNYHRINY DQHEINPTMM NYTSISNQSN LNNPIGNTLP QPQIRIQNPN  300
LNYFMYQNRM QSSMPTNVYG SGKNNECKVE QFSSNQSQDT GLSNDTSSAV SKLDMERNRA  360
LYDDLEGPSS VAPLSDLDSF WDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-511517715171NO APICAL MERISTEM PROTEIN
1ut4_B1e-511517715171NO APICAL MERISTEM PROTEIN
1ut7_A1e-511517715171NO APICAL MERISTEM PROTEIN
1ut7_B1e-511517715171NO APICAL MERISTEM PROTEIN
3swm_A1e-511517718174NAC domain-containing protein 19
3swm_B1e-511517718174NAC domain-containing protein 19
3swm_C1e-511517718174NAC domain-containing protein 19
3swm_D1e-511517718174NAC domain-containing protein 19
3swp_A1e-511517718174NAC domain-containing protein 19
3swp_B1e-511517718174NAC domain-containing protein 19
3swp_C1e-511517718174NAC domain-containing protein 19
3swp_D1e-511517718174NAC domain-containing protein 19
4dul_A1e-511517715171NAC domain-containing protein 19
4dul_B1e-511517715171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.86310.0root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g085260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1412630.0BT141263.1 Medicago truncatula clone JCVI-FLMt-18I13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624598.10.0NAC domain-containing protein 87
SwissprotQ9FK441e-106NAC87_ARATH; NAC domain-containing protein 87
TrEMBLG7KZD90.0G7KZD9_MEDTR; NAC transcription factor-like protein
STRINGAES808160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-100Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]