PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g088090.1
Common NameMTR_7g088090, MtrDRAFT_AC149134g18v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 321aa    MW: 35544.6 Da    PI: 7.4647
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g088090.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.74.6e-17250296552
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                      +r++r++kNRe+A rsR+RK+a+++eLe kv  Le+eN++Lk +l e+
  Medtr7g088090.1 250 RRQKRMIKNRESAARSRARKQAYTQELEIKVSHLEEENERLK-RLHEI 296
                      79*************************************999.55555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.0E-15243292No hitNo description
SMARTSM003381.4E-15246314IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.289248292IPR004827Basic-leucine zipper domain
PfamPF001701.6E-13250292IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.44E-11250294No hitNo description
CDDcd147077.56E-25250295No hitNo description
PROSITE patternPS000360253268IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGSHGGAIQE QKTGTLAREG SLYNLTFDEV QNQLGNLGKP LGSMNLDELL KSLWTSEATQ  60
GSGLDSGTTD GYMQHGQLAS GSSMNPLTLS GDLSKKTIDE VWRDMQQKKS ASPDRRTATL  120
GEMTLEDFLM KAGVATESFP SEDNAMSGRV DSQQQQQNTS QHGHWMQYQV PSVQQPQQQH  180
QHQNHQNNMM TGFAGYMAGH VVQQPVLDAG YTEAMVSLSP SSLMATSSDT QTQGRKRVAS  240
GVVVEKTVER RQKRMIKNRE SAARSRARKQ AYTQELEIKV SHLEEENERL KRLHEIERVL  300
PSMPPPDPKH QLRRTSSAPL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.18470.0glandular trichome| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g088090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1491340.0AC149134.2 Medicago truncatula clone mth2-19l15, complete sequence.
GenBankAC2035500.0AC203550.5 Medicago truncatula clone mth2-145m13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624832.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9LES31e-100AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLQ2HUH20.0Q2HUH2_MEDTR; BZIP transcription factor
STRINGAES810500.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.14e-94ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  3. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]