PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g089400.1
Common NameMTR_7g089400
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 139aa    MW: 15813.4 Da    PI: 8.501
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g089400.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.4e-1277108334
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskap 34 
                      ++h+e+E+rRR+riNs ++ Lr+llP +sk++
  Medtr7g089400.1  77 KNHKEAEKRRRERINSHLDHLRTLLPCNSKTR 108
                      58*************************86433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-871107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.53174138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-977106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-977109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-877109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MLQQQINNIG MENNSELFQF LVANNPSFFE YSTPSSTMMQ QSFCSSSDNN NNYYHPFEVS  60
EITDTPSQQD RALAALKNHK EAEKRRRERI NSHLDHLRTL LPCNSKTRQG FTSSKSSRTC  120
EGFKATNLSN HTTRNSSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.214100.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g089400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1468770.0BT146877.1 Medicago truncatula clone JCVI-FLMt-14B15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625604.12e-74transcription factor bHLH106
SwissprotO806745e-15BH106_ARATH; Transcription factor bHLH106
TrEMBLG7L5X82e-97G7L5X8_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES811732e-73(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3907822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-17bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]