PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g089800.2
Common NameMTR_7g089800
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 424aa    MW: 46986.7 Da    PI: 6.9027
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g089800.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.29.7e-10136178345
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Medtr7g089800.2 136 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 178
                      568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.0E-8128181No hitNo description
PfamPF077165.9E-7134180IPR004827Basic-leucine zipper domain
SMARTSM003381.4E-8134197IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415136180IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-7138181No hitNo description
CDDcd147082.11E-21138190No hitNo description
PROSITE patternPS000360141156IPR004827Basic-leucine zipper domain
PfamPF141441.2E-30221295IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEGTNIHPSR ISDFGALEQS LGFRVEDAMN LSRNPVFNQM KANSQALGAD IQFGALSKSI  60
ANSDINLSAA IAGSQTLQLQ KDAMPNLAST SGGHRENWGE SNMAEGSADT STDDTEDKNQ  120
MPERGESSER SKDKSDQKTL RRLAQNREAA RKSRLRKKAY VQQLESSRLK LTQLEQELQR  180
ARQQGIFISS TGEQTHSMSG NGAMAFDAEY ARWLEEHNRQ TNELRAAINS HAGDIELRTI  240
VDNFMTQFED IYRLKGVAAK ADVFHILSGM WKTPAERCFM WIGGFRSSEL LKLLVSHLEP  300
LTEQQLMGIY NLQQSSQQAE DALSQGMDAL QQSLSETLAN GSPNPSGASG NVANYMGQMA  360
MAMGKLGTLE GFLRQADNLR QQTLQQMLRI LTTRQSARAL LAISDYFSRL RALSSLWLAR  420
PRE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.18710.0leaf| pod| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g089800.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1395140.0BT139514.1 Medicago truncatula clone JCVI-FLMt-18J5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624993.10.0transcription factor TGA2.3 isoform X1
RefseqXP_024626252.10.0transcription factor TGA2.3 isoform X1
RefseqXP_024626253.10.0transcription factor TGA2.3 isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLG7KQS10.0G7KQS1_MEDTR; Leucine zipper transcription factor
STRINGAES812110.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-147TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]