PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g090410.1
Common NameMTR_7g090410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 261aa    MW: 30065.4 Da    PI: 9.3381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g090410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.3e-1466118155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++ +hn+ Er RR++iNs ++ Lr+llP  +   + kK+s   +  ++ +YI +Lq
  Medtr7g090410.1  66 KKLNHNASERDRRKKINSLISSLRSLLPGeD---QTKKMSIPVTISRVLKYIPDLQ 118
                      6789*************************66...8888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.66565117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-566122No hitNo description
Gene3DG3DSA:4.10.280.103.1E-1366136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-1166118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-1666137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1071123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVAFCPPQFS YSNMGWLLEE LEPESLISHK EKNYASLEYS LPYHQFSSPK EHVEIERPPS  60
PKLMAKKLNH NASERDRRKK INSLISSLRS LLPGEDQTKK MSIPVTISRV LKYIPDLQKQ  120
VQGLTKKKEE LLSRISHRQE YAVNKESQRK KIPNYNSAFV VSTSRLNDTE LVIHISSYEA  180
NKIPLSEILM CLENNGLLLL NSSSSKTFGG RLFYNLHFQV DKTQRYECDD LIQKLSSIYE  240
KQQNNHLGTM DQTINSVLIY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g090410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1254780.0AC125478.14 Medicago truncatula clone mth2-31i19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625051.20.0transcription factor ORG2
TrEMBLG7KRQ00.0G7KRQ0_MEDTR; Putative transcription factor bHLH family
STRINGAES812691e-180(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-44bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]