PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g091810.1
Common NameMTR_7g091810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 269aa    MW: 29426.5 Da    PI: 8.2137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g091810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05203225223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      kCp C+  Fs+  +L+ H ++ H
  Medtr7g091810.1 203 KCPLCDAKFSSAASLVDHAKKvH 225
                      7*******************989 PP
2zf-C2H212.30.0005243264323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      Cp+C+k F ++ +L+ H  + H
  Medtr7g091810.1 243 CPKCSKGFLDPVSLVEHVERdH 264
                      *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.57E-12459No hitNo description
Gene3DG3DSA:4.10.1110.102.6E-101053IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.6641059IPR000058Zinc finger, AN1-type
SMARTSM001540.0111352IPR000058Zinc finger, AN1-type
PfamPF014283.5E-131351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.8E-1091146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.23E-893143No hitNo description
PROSITE profilePS510397.86698147IPR000058Zinc finger, AN1-type
SMARTSM001540.035101142IPR000058Zinc finger, AN1-type
PfamPF014282.5E-8101141IPR000058Zinc finger, AN1-type
PROSITE profilePS501578.912202225IPR007087Zinc finger, C2H2
SMARTSM003550.018202225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204225IPR007087Zinc finger, C2H2
SMARTSM003552.2241264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704241268IPR007087Zinc finger, C2H2
PROSITE patternPS000280243264IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVSDCRL IDFLPFTCDR CNQVYCLGHR SYIEHNCTKP NKQDVTVVIC  60
PLCAKGVRLI PDQDPNIVWE HHVNTDCDPS NYEKATKKKK CPVPGCRETL VFSNTIKCRD  120
CEVDHCLKHR FGPDHKCPGP KKLETSFSFM SLWNMSSGKE VSKPNLSSTT SSKWTSSLLD  180
MASKLSGIGQ SSGSGTSNNQ LEKCPLCDAK FSSAASLVDH AKKVHQRSGG NQYGAKKVSI  240
SACPKCSKGF LDPVSLVEHV ERDHGGCS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.231500.0root
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g091810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449626.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ8VZ421e-110SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A072U1R20.0A0A072U1R2_MEDTR; Putative transcription factor C2H2 family
STRINGGLYMA02G31550.21e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-108C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]