PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g092510.1
Common NameMTR_7g092510, MtrDRAFT_AC155881g18v1
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 341aa    MW: 37693.2 Da    PI: 5.6385
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g092510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08183230455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +     k    a +L + +++++ Lq
  Medtr7g092510.1 183 SHSLAERARREKINARMKLLQELVPGC----EKISGTALVLDEIINHVQTLQ 230
                      8*************************8....455667777888888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-14177248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-8177234No hitNo description
PROSITE profilePS5088814.164179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-14180247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-7185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEQATVGLSG SIHDDSVQFD EEIQGIMIPA PAPENASSFT ALLELPPTLA VELLHLPEQK  60
PYLPNSSNGN LTFPTNAALI ERAAKFSVFA GENSSPGDSR LFPVESVKNE PQETDSNPCS  120
TQECVSDPAE NKNQRNVKRK EREKKGKASS SKKSKSIADE TSGAGEKLPY VHVRVRRGQA  180
TDSHSLAERA RREKINARMK LLQELVPGCE KISGTALVLD EIINHVQTLQ RQVEILSMKL  240
AAVNPRIDFN LDRLLAADGS SLMDSNLPST MVTPLVWPEM PLNSNRQHYQ QQWQFDAFHQ  300
PLWGREEDNH NFTTPENSLL SYNSSANSAS LHSNQLKMEL *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.128800.0flower| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g092510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1411140.0AC141114.14 Medicago truncatula clone mth2-8g20, complete sequence.
GenBankAC1558810.0AC155881.2 Medicago truncatula chromosome 7 clone mte1-60d3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625196.10.0transcription factor bHLH48
SwissprotQ8VZ029e-92BH048_ARATH; Transcription factor bHLH48
TrEMBLA2Q3E90.0A2Q3E9_MEDTR; Helix-loop-helix DNA-binding
STRINGAES814140.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.12e-85bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]