PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g093130.2
Common NameMTR_7g093130
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C3H
Protein Properties Length: 232aa    MW: 24580.9 Da    PI: 9.7592
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g093130.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-083358227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     k ++C+ f     Ck+Gd+C+FaHg+
  Medtr7g093130.2 33 KSRICSKFNTAEGCKFGDKCHFAHGE 58
                     6799********************96 PP
2zf-CCCH37.92.9e-12202225226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      kt+lC +fa+ G C +GdrC+FaHg
  Medtr7g093130.2 202 KTKLCENFAK-GSCTFGDRCHFAHG 225
                      9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-132963IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-73062IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1313159IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-63358IPR000571Zinc finger, CCCH-type
SMARTSM003560.0073358IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.33E-1594176IPR004088K Homology domain, type 1
SMARTSM003222.0E-10104173IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.109.7E-15104172IPR004088K Homology domain, type 1
PROSITE profilePS5008414.613105168IPR004088K Homology domain, type 1
PfamPF000135.9E-12107169IPR004088K Homology domain, type 1
CDDcd001059.19E-13107169No hitNo description
Gene3DG3DSA:4.10.1000.105.6E-15196230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183200227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-8200230IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7200226IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-10202225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MMNLTPAAPP APRNVPAPRN AHAPNGSAPS AVKSRICSKF NTAEGCKFGD KCHFAHGEWE  60
LGKPVAPSFD DHRHNDHRHM GPPNAGRFGG HRMEPPPVPA SFGANATAKI SVEASLAGAI  120
IGKGGVNSKQ ICRQTGAKLA IREHEDPNLK NIELVGTFEQ IKDASNMVKD LLLTLQMSAP  180
PKSNQGPPGH HGAPGHHGNN LKTKLCENFA KGSCTFGDRC HFAHGAVELR K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.90240.0glandular trichome| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g093130.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1866760.0AC186676.3 Medicago truncatula chromosome 7 BAC clone mte1-31d11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625254.11e-169zinc finger CCCH domain-containing protein 14
SwissprotQ69XQ39e-74C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A072U3E21e-169A0A072U3E2_MEDTR; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAES814721e-168(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-58C3H family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]