PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g093700.1

Common Name

MTR_7g093700

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

C2H2

Protein Properties

Length: 162aa MW: 18203.3 Da PI: 4.7799

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g093700.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	29	49	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 +C++C+++F++ +L H++t Medtr7g093700.1 29 PCNHCHETFRTAQDLSWHQST 49 6*****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MESDSEFLSE SDDESSTGSS IITNVAPIPC NHCHETFRTA QDLSWHQSTY TICNINRALL 60 RLNNTYHIGP PSPPPSSHTM LFPMHGSGNY NRRFHPYVRP IPEVPIVSRI DRDYNNIDGS 120 LERTMDLISL IDKPIDSAPI EELPVVWRDG STNDINLDLK L*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g093700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	G7KWB3	1e-114	G7KWB3_MEDTR; Putative transcription factor C2H2 family
STRING	AES81523	1e-115	(Medicago truncatula)

Link Out ? help Back to Top
Phytozome	Medtr7g093700.1
Entrez Gene	11443481

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]