PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g096650.3
Common NameMTR_7g096650
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 470aa    MW: 52124.8 Da    PI: 6.5046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g096650.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.000782963331355
                      HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      R+ i +++ eLrel+P+ a      K s  + Le+ ++++  Lq
  Medtr7g096650.3 296 RQLIQDRIKELRELVPNgA------KCSIDSLLERSIKHMLFLQ 333
                      67799************77......5566667777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.506283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-4296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-5296338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MEKSSSDFMP ACMRNKTVDV LTPLQCSGRN NTTHSAYWEM GDNMVKHEGA ELYSDVSPIL  60
LQSMSDMINV EHQEFGEIRP INSRECEGGS SGCKNMILDS EQNRSSFLNN SAINNAGVYD  120
LIHQSEKNSS YTPLKFPAGC ELLEALGPSS LKGSKYFDWL AQVNQDMKIV DVPDVFNTSQ  180
LTSESHPEHL LEAMVANICH SSNNDVNSEL SFCRSMQSAL SSGKTIDASI QDVHTIDHTS  240
LVREDKNHCL SSSSKVVSST CPSACSEQFE RSSEPSKNSK KRARPGESCR PRPRDRQLIQ  300
DRIKELRELV PNGAKCSIDS LLERSIKHML FLQSITKHAD KLTKLADTKS KLHHMETDIL  360
GSSSSEQGSS WAVEVGGHLK VHSILVENLS NNGQMLIETL CEESSHFLEI AEAVRSLGLT  420
ILKGATKARN KKISICFIVE GENNRNVHRL DILWPLVQIL QSKSVVYQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.25220.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate root development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g096650.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150378e-60AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449874.10.0transcription factor EMB1444 isoform X2
SwissprotP0C7P82e-97LHWL1_ARATH; Transcription factor EMB1444
TrEMBLA0A072U2G50.0A0A072U2G5_MEDTR; BHLH transcription factor-like protein
STRINGXP_004493767.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-82conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]