PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g100100.1
Common NameMTR_7g100100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 166aa    MW: 18572.7 Da    PI: 9.5675
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g100100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000263456123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C+k Fs+   L  H  +H
  Medtr7g100100.1 34 YECKTCNKKFSSFQALGGHRASH 56
                     99**********99999998887 PP
2zf-C2H213.90.0001683105123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ Fs    L  H+r+H
  Medtr7g100100.1  83 HECSICGMGFSLGQALGGHMRKH 105
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.2E-113457IPR007087Zinc finger, C2H2
SuperFamilySSF576679.83E-1034105No hitNo description
SMARTSM003550.0613456IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5123461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.4E-481105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.2E-883107IPR007087Zinc finger, C2H2
PROSITE profilePS501579.45283105IPR007087Zinc finger, C2H2
SMARTSM003550.09483105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAMKRQRSNE GIDYANCLML LSCPQQKSYE NGEYECKTCN KKFSSFQALG GHRASHKRMK  60
LAEGEELKEQ AKSLSLWNKP KMHECSICGM GFSLGQALGG HMRKHRAVIN EGVSSINQII  120
EKFPVLKRLN SKRIMGLDLN LTPLENDDLM FGIKSPPTPI PLSLF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.74580.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g100100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253680.0AC125368.7 Medicago truncatula clone mth2-13h15, complete sequence.
GenBankAC1357970.0AC135797.13 Medicago truncatula clone mth2-11f7, complete sequence.
GenBankBT1473170.0BT147317.1 Medicago truncatula clone JCVI-FLMt-2I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625524.11e-120zinc finger protein ZAT11
SwissprotQ9SLD41e-41ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLG7L0M71e-119G7L0M7_MEDTR; Cys2-His2 zinc finger transcription factor
STRINGAES817421e-120(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-44C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]