PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g100880.1
Common NameMTR_7g100880
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family S1Fa-like
Protein Properties Length: 85aa    MW: 9267.05 Da    PI: 10.6064
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g100880.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.11.4e-411984570
             S1FA  5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                     k+ ++G+nPGl+vllv+gglll+fl+gny+lyvyaqk+lPPrkkkP+skkk+k+e+lkqGv++PGe
  Medtr7g100880.1 19 KAGSQGFNPGLVVLLVIGGLLLTFLIGNYALYVYAQKALPPRKKKPISKKKMKKERLKQGVSAPGE 84
                     56789************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.3E-392184IPR006779DNA binding protein S1FA
ProDomPD0190131.0E-42284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MADEFEFGDK IPPSFDRMKA GSQGFNPGLV VLLVIGGLLL TFLIGNYALY VYAQKALPPR  60
KKKPISKKKM KKERLKQGVS APGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.246751e-111glandular trichome| root| seed
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g100880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1416101e-140BT141610.1 Medicago truncatula clone JCVI-FLMt-6A8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625597.16e-54DNA-binding protein S1FA
SwissprotQ423379e-14S1FA2_ARATH; DNA-binding protein S1FA2
SwissprotQ7XLX68e-14S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLG7L1S41e-52G7L1S4_MEDTR; DNA-binding protein S1FA
STRINGAES818152e-53(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09735.11e-06S1FA-like DNA-binding protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]