PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g100905.1
Common NameMTR_7g100905
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family S1Fa-like
Protein Properties Length: 74aa    MW: 7877.51 Da    PI: 10.933
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g100905.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.41.2e-411073770
             S1FA  7 eakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                      ++G+nPGlivllv+gglll+fl+gny+lyvyaqk+lPPrkkkPvskkk+k+e+lkqGv++PGe
  Medtr7g100905.1 10 GSQGFNPGLIVLLVIGGLLLTFLIGNYALYVYAQKALPPRKKKPVSKKKMKKERLKQGVSAPGE 73
                     579************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.9E-401073IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MADKVPPNAG SQGFNPGLIV LLVIGGLLLT FLIGNYALYV YAQKALPPRK KKPVSKKKMK  60
KERLKQGVSA PGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.41281e-119flower| leaf| root| seed
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g100905.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1477311e-121BT147731.1 Medicago truncatula clone JCVI-FLMt-2O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449980.11e-44DNA-binding protein S1FA
SwissprotQ7XLX67e-15S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A072U4F53e-43A0A072U4F5_MEDTR; DNA-binding protein S1FA
STRINGAES818172e-41(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]