PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g103340.1
Common NameMTR_7g103340
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 233aa    MW: 27162.3 Da    PI: 6.7979
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g103340.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.6e-1961116156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r k+ ++t++q++ Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k
  Medtr7g103340.1  61 REKKKRLTSNQIDSLEKSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 116
                      567888*************************************************9 PP
2HD-ZIP_I/II116.91.2e-3762154193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekk+rl+++q+ +LE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+k+kqlE+ y++Lk+++d +++e+++L++ev +L+ +lke
  Medtr7g103340.1  62 EKKKRLTSNQIDSLEKSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDVLKQEFDVVSKEKQKLQEEVMKLKGKLKE 154
                      69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1949120IPR009057Homeodomain-like
PROSITE profilePS5007117.8858118IPR001356Homeobox domain
PfamPF000463.0E-1661116IPR001356Homeobox domain
SMARTSM003891.5E-1661122IPR001356Homeobox domain
CDDcd000864.46E-1561119No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2064125IPR009057Homeodomain-like
PRINTSPR000317.9E-58998IPR000047Helix-turn-helix motif
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PRINTSPR000317.9E-598114IPR000047Helix-turn-helix motif
PfamPF021832.3E-8118152IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDWNESTRPF VPHTESSLSF FYNYNNTPYS GMEMSQPSLG ETQQRLLPAM DEMNIDGNNY  60
REKKKRLTSN QIDSLEKSFQ EEIKLDPERK MKLSRELGLQ PRQIAVWFQN RRTRWKAKQL  120
EHLYDVLKQE FDVVSKEKQK LQEEVMKLKG KLKEQSGGNF RTQTYVEETV ESTSEGLRCS  180
NKPTSSSIQQ AVPDQGYNNN NNSTTFIVED FNNSVSMPPN QCHWPVLPNY YP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118RRTRWKAKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g103340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013450066.11e-174homeobox-leucine zipper protein ATHB-22
SwissprotQ9LZR01e-45ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A072U3151e-172A0A072U315_MEDTR; Homeobox leucine zipper protein
STRINGXP_004494126.11e-115(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-47homeobox 51
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  3. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]