PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g104980.1
Common NameMTR_7g104980, MtrDRAFT_AC150442g29v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 216aa    MW: 23805.1 Da    PI: 5.9405
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g104980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY42.41.4e-1318562360
                     EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY 23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60
                     sYY+C+++ +C +kk+ve+s+ + +++++ Y g Hnh+k
  Medtr7g104980.1 18 SYYKCSTSgDCLAKKQVEKSKAEDNTFVVRYIGMHNHKK 56
                     9*****999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007741.5E-61256IPR003657WRKY domain
PfamPF031065.5E-91655IPR003657WRKY domain
SuperFamilySSF1182901.83E-101757IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-101757IPR003657WRKY domain
PROSITE profilePS5081114.7221857IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MYEIKKIAAH CLMDTYMSYY KCSTSGDCLA KKQVEKSKAE DNTFVVRYIG MHNHKKPVVN  60
RNFVNETTQN KSSKTKLLVI RDTGSPSNVR NLGSPNVAML QFDHSENSNA QVLAGKSKVP  120
CLETKVTESH LPVVGEFKSS ANVGNLGLPS GMMLQFDEMD NDNDHVLAGE SRISYSKSEL  180
IGSFDDDDIM IPNMVAMSED LLLDFNLLNG GILFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g104980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1504420.0AC150442.2 Medicago truncatula chromosome 7 clone mth2-2o12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632663.11e-64probable WRKY transcription factor 29
TrEMBLQ2HTE91e-158Q2HTE9_MEDTR; DNA-binding WRKY
STRINGAES820691e-159(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1787927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.13e-12WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]