PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g105000.1
Common NameMTR_7g105000
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 359aa    MW: 40550.6 Da    PI: 6.738
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g105000.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.92.7e-10320341223
                      --SS-EEEEEEE--TT-SS-EE CS
             WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                      +D ++WrKYGqK++kgse+pr+
  Medtr7g105000.1 320 EDPWAWRKYGQKPIKGSEHPRH 341
                      799******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-9312341IPR003657WRKY domain
PROSITE profilePS5081112.748314350IPR003657WRKY domain
SuperFamilySSF1182902.35E-7315341IPR003657WRKY domain
SMARTSM007742.5E-4319352IPR003657WRKY domain
PfamPF031065.0E-6320342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDNDDWDLFS IVRRCKATTL AQPTTNFETP PPTTTIPYNN TISPQNTTSS YFDSFTFNDE  60
NNSFPFTPPR PNDFIDLEKL IFNSIPTTVV PTPTTTIPTP TTLTTITPTI PTHITTTATL  120
TNTSVQGSDQ NSIRFDFPIP VEHQLVQPNY LTELEKIMLN FNPITINPTP TFTTPTTPTT  180
ITPVSNTTTF TTPKPTTIIH TPFTTTPTMS TVLGTNQNTT FSDFSMFIQQ QHIQPDHNNQ  240
VFALKTIACV DITTAHFDRA NNHPSVLNQP SREQNQPPIP VPRTTSRVLP YTHPHKPNSR  300
KRRSNDMVME FCMNEDKLEE DPWAWRKYGQ KPIKGSEHPR HVIFAIARNC GKMELMWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298303SRKRRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g105000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1504420.0AC150442.2 Medicago truncatula chromosome 7 clone mth2-2o12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7KQX90.0G7KQX9_MEDTR; WRKY DNA-binding domain protein
STRINGAES820710.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-08WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]