PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g109600.2
Common NameMTR_7g109600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 200aa    MW: 22653.1 Da    PI: 4.4384
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g109600.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.58.7e-166452159
                     -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY 21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                      r+YYrC++  gC++kk+vers++d ++++itY+++Hnh+
  Medtr7g109600.2  6 YRGYYRCSTCkGCSAKKQVERSSTDASLLIITYTSTHNHP 45
                     59*****9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031063.0E-12645IPR003657WRKY domain
SuperFamilySSF1182901.03E-12647IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-15647IPR003657WRKY domain
PROSITE profilePS5081118.223747IPR003657WRKY domain
SMARTSM007741.0E-7746IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MLVQIYRGYY RCSTCKGCSA KKQVERSSTD ASLLIITYTS THNHPDPTAL SSTTNLAQQP  60
KESKTETTKD LPVTSKEENQ EQKQVEEEIN SNKSTVSSSD QVTNEENFHY LQSTTHCSED  120
IIIDQEDPFK LNIEKSHIDK IDLLLEEEPL CYAQLKNMSA SKSEEFDFFD ELEELPMSSS  180
ILHFTRSIFS DERIPVAPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.77840.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g109600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1715330.0AC171533.3 Medicago truncatula chromosome 7 BAC clone mth2-82b20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625977.11e-139probable WRKY transcription factor 35
TrEMBLA0A072U3Y11e-143A0A072U3Y1_MEDTR; WRKY family transcription factor
STRINGAES821951e-138(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-18WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]